Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902321.1_cds_XP_016452357.1_46606
CDS Infomation

[gene=LOC107776915] [db_xref=GeneID:107776915] [protein=E3 ubiquitin-protein ligase SHPRH-like] [protein_id=XP_016452357.1] [location=join(83606..84408,84497..84703,85258..85319,92223..92712,95017..95217,96508..96763,96906..97146,97219..97388,97475..98047,103117..103283,104385..104415)] [gbkey=CDS]
Sequence

ATGGGTCGAAGGAAATCTAAGCCAAATCGTTCAGTAGGAATTTTGGAAGGAGAAGTTCCT
AATGGGCAATCAAACGGCAAAAATGATGCTGAAACTGCGAAAAAAGATGTGTCTTTTGAA
GTTGACGTGCCATTTTTCGTTGAAATTGACAGGTCTAATTGGTTGTCTGATGAACATATG
GATATTTCTGAAATTGTTTTATCTGACTTGAATGTTAGTGAAGAGTTTTGTCACTATGTA
TTGGATGAGGAGTTTTACCGGGATTCGAGGTATATATTGAGGTTTAGGGTGAGTAATGTT
GATGAGTATCTTAATAGGATAAAGTTAGGTCATTGGCCTGTATTCCCTGCTAGTAGTATA
TGTTTGGAAATTGTAGTGAAAAAGGAGAAGGAGGGTTTGGAGGAAAATGTTGTGTTGGTG
GAGGGAAATTTTGATGGACCTGATGAAGGTATATCGGGGCTAGTCCATTTGGCTAGTTTG
AAATTCTTGACGTTGAGGCCTGTTACGGGGCATATTGTTCCAAGTTGTTTAGCATCTATA
CGGTTGAGGGTGGAGATTTTAAGAAGTGCATTTGACGCGTGTGAGTCACTTCTTGATACA
TCCAGACAGCTATGGAAAAAGAGCATGATGCATGTGATGGCTTGGCTACGTCCAGAGGTT
GTGACTTCAGAGGCTAGATATGGATACGAGGTGGCAGCACATTCAGATGTTGGTCTAGCT
TCAGGGCTGGCTGAAAGTTCTGCTTCAAGGAAATGTTCTAGGTTTGATGTAGCTAGTTTC
TATGAAGCTATTAAGCCATCAAAGGAGGAGCCGATGCTGGACGATAACCTCCCTGGTTTG
CTTCCTAAGCTTAGACCTTACCAGCGTCGTGCAGCTTATTGGATGGTGCAGAGGGAGAAA
AGAAATTTTGATGGCTCTTTGCAAAGCAAAATAAATCGCTTTATTTCTCCTCTATGTATG
CAACTGAGTTTAATTGAGACCTCTATGACAATATATTACAATCCATTTTGTGGAAATGTA
TCCTTGCATGCAGAGATTGCCCCACCAGTTGTTCCTGGTGGTATTTTAGCTGATGAGATG
GGGCTGGGAAAAACTGTTGAGCTGCTTGCCTGTATATTTACACATCCGGTGGCATCATCT
TGTGTTGGCAATTTTACTGGTGAATTGCTGTGTGATGAGGGTCAGAAAAATAGTCTGAAA
AGACTGAAAAGAGAGCGTGTTGAGTGTATATGTGGTTCTGTGAGTGAAAGCATCAGATAT
AAAGGATTGTGGGTTCAGTGTGATGTTTGTGATGCGTGGCAACATGCAGATTGTGTGGGT
TACTCACCTAAAAAGAAATATGCAAAATGCGAAGCAATCTTAAATGGACAGCAGTCAACT
GTCAATATGTGCAAGCGAGCTAAACGCAAAAACGATGTTAAAATAGTTGAGATGGAAGGC
TGCTATATCTGCGAACCATGCTCAGAACTGATCCAAGCTACTGTAGCGCCGGTTGCCACA
GGTGCAACTCTTATAGTGTGTCCAGCTCCTATATTGCCCCAGTGGCATGCTGAAATTGTT
CGTCATACAAATCCTGATGTGCTGAAAACATGCATTTATGAAGGCGTGAGGACTAGCTCT
TTATCACAGATGCCCTTGCCAGATATAGATGAGCTTCTCAGTGCCGACATCGTTTTGACA
ACTTATGACGTACTGAAAGAGGACTTATCACACGACTCTGACAGGCATGAAGGTGATCGT
CGAGCTATGAGATTTGAGAAAAGATATCCTGTTATACCTACTCTACTAACCAGAATATTA
TGGTGGAGGATATGTCTGGATGAAGCTCAAATGGTAGAGACTAATGCTGCTGCTGCAACT
GAAATGGCACTAAGACTACATGGAGTTCATCGGTGGTGCATTACAGGGACTCCCATACAA
AGGAAACTTGATGACTTGTTTGGTCTTTTGAGATTCCTCAATGCAAGTCCTTTTAATATT
TTTAGGTGGTGGACCGATATTATACGTGATCCTTATGAGAAGGGAGATTCCAGAGCGATG
GCTTTCACACATGATTTCTTTAAGCACCTAATGTGGAGGTCATCAAAAGTGAATGTTGCT
GATGAACTGCAGCTTCCACCTCAAGAAGAGTGTGTCTCTTGGCTTTCTCTTTCACCAATT
GAAGAGCACTTTTATCAAAGGCAGCATGAGACTTGTGTGAATGACGCTTGTGAGCTTATT
GAAAGTTTCAAAAATGATATATACAAGAGAAAAGCACCTGGTTCCCAGTTGGAAGATGCT
GCATCAGATGTTGTTATCACAAATATAGAGGCTGCCAAGCTCTTTAACTCACTTCTAAAA
CTACGCCAAGCCTGTTGCCACCCCCAAGTGGGGAGTTCTGGGTTGCGATCACTACAACAG
TCTCCCATGACTATGGAGGAGATTCTGTCGGTTCTGGTGAGTAAGACTAAGGTAGAAGGA
GAGGAAGCCCTCCGGAGATTAGTTGTTGCATTAAATGCACTGGCCGGTATTGCTATAATT
AATCAAAATTATTCTCAAGCCGTATCATTATACCAAGAAGCACTCGCTTTAGCAGAAGAC
CATTTCGAGGATTTCCGGTTGGATCCCTTATTAAACATTCATATTACTCATAATCTTGCT
GAGATACTCCCACTCAGTTCTGACAGTTCGAAAAAGCTTGAATCTGCGCCTGGAAGCCCT
AGAGATAAAGTATCCAACATGGAAGATGCTGGACAAAGTAATAAAGGTGCTCTACACGGG
GAAGACAAAATTAAGGAGGAAAGCATTTTAGTCACTAGCTCTGGCGATCCATCCAACTTA
ATGTCAAATTCATTGGCAAAAGATTCTGTTGACGAAAATTCTGAGACTAAGTTAAAATTA
TCCACTTGTACAAGTTATGAATCATTGAGAACAGCATGTGAAAGGTTGAAGAAAAAATTC
TTATCCGTGTTTAGTTTGAAGCTGGCAGGGGTCCAACAAGAGTTCAAGAAGTCATATGAT
CAGGTATGTAACGCATTTACTGATAGAAAGAACCAGTATTCTGCTTGGTGGTTGGAAGTT
TTACATCATATCGAGCAAAACAAGGACTCCTCAAATGAATTGATCAGGAAAATAGGAGAA
GCTGTGTCTGGGACGCTAAACACCTCTAGGGCATCAAAAGTTGCTTCCTGGTGCTCACAT
AGTGAAGAGCTGAAGGCATAG

Peptide Sequence

PEP ID

XP_016452357.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Nicotiana tabacum]
Sequence

MGRRKSKPNRSVGILEGEVPNGQSNGKNDAETAKKDVSFEVDVPFFVEIDRSNWLSDEHM
DISEIVLSDLNVSEEFCHYVLDEEFYRDSRYILRFRVSNVDEYLNRIKLGHWPVFPASSI
CLEIVVKKEKEGLEENVVLVEGNFDGPDEGISGLVHLASLKFLTLRPVTGHIVPSCLASI
RLRVEILRSAFDACESLLDTSRQLWKKSMMHVMAWLRPEVVTSEARYGYEVAAHSDVGLA
SGLAESSASRKCSRFDVASFYEAIKPSKEEPMLDDNLPGLLPKLRPYQRRAAYWMVQREK
RNFDGSLQSKINRFISPLCMQLSLIETSMTIYYNPFCGNVSLHAEIAPPVVPGGILADEM
GLGKTVELLACIFTHPVASSCVGNFTGELLCDEGQKNSLKRLKRERVECICGSVSESIRY
KGLWVQCDVCDAWQHADCVGYSPKKKYAKCEAILNGQQSTVNMCKRAKRKNDVKIVEMEG
CYICEPCSELIQATVAPVATGATLIVCPAPILPQWHAEIVRHTNPDVLKTCIYEGVRTSS
LSQMPLPDIDELLSADIVLTTYDVLKEDLSHDSDRHEGDRRAMRFEKRYPVIPTLLTRIL
WWRICLDEAQMVETNAAAATEMALRLHGVHRWCITGTPIQRKLDDLFGLLRFLNASPFNI
FRWWTDIIRDPYEKGDSRAMAFTHDFFKHLMWRSSKVNVADELQLPPQEECVSWLSLSPI
EEHFYQRQHETCVNDACELIESFKNDIYKRKAPGSQLEDAASDVVITNIEAAKLFNSLLK
LRQACCHPQVGSSGLRSLQQSPMTMEEILSVLVSKTKVEGEEALRRLVVALNALAGIAII
NQNYSQAVSLYQEALALAEDHFEDFRLDPLLNIHITHNLAEILPLSSDSSKKLESAPGSP
RDKVSNMEDAGQSNKGALHGEDKIKEESILVTSSGDPSNLMSNSLAKDSVDENSETKLKL
STCTSYESLRTACERLKKKFLSVFSLKLAGVQQEFKKSYDQVCNAFTDRKNQYSAWWLEV
LHHIEQNKDSSNELIRKIGEAVSGTLNTSRASKVASWCSHSEELKA

Transcript Sequence

Gene sequence data has not been registered.